Update dependencies ahead of the 3.11.0 release (retry).

Also updates MuJoCo files needed to address changes in Filament.
- "build with clang on windows" patch to sync context lines, remove some
  upstream conflicts, disable Clang thread-safety attribute errors, and
  allow running on MSYS2.
- Skip building Filament samples.
- Add missing <string_view> to material_manager.cc.

.pre-commit-config.yaml

@@ -3,4 +3,5 @@ repos:
     rev: v5.0.0
     hooks:
       - id: trailing-whitespace
+        exclude: \.patch$
       - id: end-of-file-fixer