#!/usr/bin/env python3 """Jointly fit zero/travel and uncalibrated cameras to five annotated real photos. The photo coordinates are manual estimates with uncertainty, not measured 3-D poses. Four contact constraints still use actual MuJoCo forward kinematics. """ from __future__ import annotations import argparse import json import os from pathlib import Path import sys import xml.etree.ElementTree as ET if '--render' in sys.argv: os.environ.setdefault('MUJOCO_GL', 'egl') import numpy as np from scipy.optimize import least_squares from scipy.spatial.transform import Rotation import calibrate as base ANNOTATIONS = Path(__file__).with_name('photo_landmarks.json') V1_JSON = base.MODEL_DIR / 'o30_right_pinch_calibration_v1.json' PHOTO_JSON = base.MODEL_DIR / 'o30_right_photo_calibration.json' PHOTO_URDF = base.MODEL_DIR / 'linkerhand_o30_right_photo_calibrated.urdf' REPORT = base.ROOT / 'outputs/reports/O30/o30_right_photo_calibration' BASE_COUNT = 56 # 40 shared joint parameters + 4*4 pad contact coordinates class PhotoCalibration(base.Calibration): def __init__(self): super().__init__() self.annotations = json.loads(ANNOTATIONS.read_text()) self.zero_command = np.array(self.annotations['zero_command'], dtype=float) self.photos = self.annotations['photos'] if self.n != 4 or [p['name'] for p in self.photos] != ['index', 'middle', 'ring', 'pinky', 'zero']: raise ValueError('Expected four ordered pinches and one zero photo') if self.zero_command.shape != (20,) or not np.all(np.isfinite(self.zero_command)): raise ValueError('Invalid zero command') if not np.all((self.zero_command >= 0) & (self.zero_command <= 255)): raise ValueError('Zero command outside SDK range') self.photo_commands = [*self.commands, self.zero_command] self.width, self.height = self.annotations['image_size'] self.center = np.array([self.width/2, self.height/2]) landmarks = {name: (int(self.model.jnt_bodyid[self.model.joint(name).id]), np.zeros(3)) for name in base.NAMES} for finger in base.FINGERS: raw = (base.MODEL_DIR/'meshes'/f'{finger}_distal.STL').read_bytes() dtype = np.dtype([('normal', ' vertices[:, axis].max()-.0005].mean(0) landmarks[finger+'_tip'] = (self.model.body(finger+'_distal').id, tip) self.photo_data = [] for photo in self.photos: points = photo['points'] body = np.array([landmarks[p[0]][0] for p in points]) local = np.array([landmarks[p[0]][1] for p in points]) uv = np.array([p[1:3] for p in points], dtype=float) sigma = np.array([p[3] for p in points], dtype=float) if np.any(sigma <= 0) or not np.all(np.isfinite(uv)): raise ValueError('Invalid photo annotations') self.photo_data.append((body, local, uv, sigma)) self.v1 = np.array(json.loads(V1_JSON.read_text())['parameter_vector']) def world_points(self, photo_index, q): self.data.qpos[self.adr] = self.positions(q, self.photo_commands[photo_index]) base.mujoco.mj_kinematics(self.model, self.data) body, local, _, _ = self.photo_data[photo_index] return self.data.xpos[body] + np.einsum('ijk,ik->ij', self.data.xmat[body].reshape(-1, 3, 3), local) def project(self, world, camera, focal): point = world @ Rotation.from_rotvec(camera[:3]).as_matrix().T + camera[3:] return point[:, :2]/point[:, 2, None]*focal+self.center @staticmethod def robust_photo_residual(error): # Reduce the influence of occlusion and uncertain manually picked centres. return error/(1+(error/3)**2)**.25 def camera_initial(self, q): rotation = Rotation.from_matrix(np.array([[0, 1, 0], [0, 0, -1], [-1, 0, 0]])).as_rotvec() cameras = [] for i in range(5): world = self.world_points(i, q) _, _, observed, sigma = self.photo_data[i] result = least_squares(lambda v: ((self.project(world, v, 1000)-observed)/sigma[:, None]).ravel(), np.r_[rotation, 0, .08, .5], max_nfev=100) cameras.append(result.x) return np.r_[np.array(cameras).ravel(), np.log(1000)] def camera_bounds(self): return (np.r_[np.tile([-6, -6, -6, -.3, -.2, .2], 5), np.log(500)], np.r_[np.tile([6, 6, 6, .3, .3, 1.5], 5), np.log(2000)]) def photo_residual(self, q, camera_parameters): cameras = camera_parameters[:30].reshape(5, 6) focal = np.exp(camera_parameters[-1]) out = [] for i in range(5): uv = self.project(self.world_points(i, q), cameras[i], focal) _, _, observed, sigma = self.photo_data[i] out.extend(self.robust_photo_residual((uv-observed)/sigma[:, None]).ravel()) out.append((camera_parameters[-1]-np.log(1000))/.35) return out def joint_residual(self, v): q = v[:BASE_COUNT] out = list(super().residual(q)) # Slightly strengthen opposing-pad orientation after adding noisy photos. for i in range(4): self.set_pose(q, self.commands[i]) _, thumb = self.world_pad(q, i, 'thumb') _, finger = self.world_pad(q, i, self.samples[i]['finger']) out.extend((thumb+finger)/.065) out.extend(self.photo_residual(q, v[BASE_COUNT:])) # Weak anatomical prior from the straight zero photo, not measured angles. sigma_degrees = np.full(20, 3.) sigma_degrees[[0, 1, 6, 15]] = 5. out.extend(self.positions(q, self.zero_command)/np.deg2rad(sigma_degrees)) return np.array(out) def fit_cameras(self, q, initial=None): initial = self.camera_initial(q) if initial is None else initial return least_squares(lambda v: self.photo_residual(q, v), initial, bounds=self.camera_bounds(), max_nfev=300, x_scale='jac').x def photo_metrics(self, q, camera_parameters): cameras = camera_parameters[:30].reshape(5, 6) focal = np.exp(camera_parameters[-1]) result, all_errors = [], [] for i in range(5): uv = self.project(self.world_points(i, q), cameras[i], focal) _, _, observed, sigma = self.photo_data[i] errors = np.linalg.norm(uv-observed, axis=1) all_errors.extend(errors) result.append(dict(photo=self.photos[i]['name'], points=len(errors), rms_px=float(np.sqrt(np.mean(errors**2))), points_detail=[dict(name=p[0], observed_px=obs.tolist(), predicted_px=pred.tolist(), sigma_px=float(s), error_px=float(e)) for p, obs, pred, s, e in zip(self.photos[i]['points'], observed, uv, sigma, errors)])) return dict(aggregate_rms_px=float(np.sqrt(np.mean(np.array(all_errors)**2))), focal_px=float(focal), photos=result) def fit_photos(self, initial, starts, max_nfev): rng = np.random.default_rng(20260921) low, high = self.bounds() clow, chigh = self.camera_bounds() bounds = np.r_[low, clow], np.r_[high, chigh] best, history = None, [] for i in range(starts): start = initial.copy() if best is None else best.x.copy() if i: start[:40] += rng.normal(0, .025, 40) result = least_squares(self.joint_residual, np.clip(start, bounds[0]+1e-10, bounds[1]-1e-10), bounds=bounds, max_nfev=max_nfev, x_scale='jac', diff_step=1e-4, ftol=1e-7, xtol=1e-9) rows = self.metrics(result.x[:BASE_COUNT]) try: base.check_metrics(rows) accepted = True except RuntimeError: accepted = False history.append(dict(start=i+1, cost=float(result.cost), nfev=result.nfev, accepted=accepted, success=bool(result.success), message=result.message)) print(json.dumps(history[-1]), flush=True) if accepted and (best is None or result.cost < best.cost): best = result if best is None: raise RuntimeError('No candidate passed contact acceptance; existing model was not replaced') return best, history def save(cal, vector, history): q = vector[:BASE_COUNT] base.CAL_URDF, base.CAL_JSON = PHOTO_URDF, PHOTO_JSON info = base.save_solution(cal, q, dict(method='Joint bounded photogeometric fitting', history=history, objective_evaluations=cal.evaluations, seed=20260921)) # Silver housing and grey pads match the photos; this does not change physics. tree = ET.parse(PHOTO_URDF) for link in tree.getroot().findall('link'): color = link.find('visual/material/color') if color is not None: color.set('rgba', '0.48 0.50 0.52 1' if link.get('name', '').endswith('_distal') else '0.68 0.70 0.72 1') tree.getroot().insert(0, ET.Comment( ' Photo/zero fitted candidate, 2026-09-21. Zero offsets are baked into ' 'joint origins; SDK 0..255 maps to limit lower..upper. ' 'See o30_right_photo_calibration.json; not a measured full-stroke calibration. ')) ET.indent(tree, space=' ') tree.write(PHOTO_URDF, encoding='utf-8', xml_declaration=True) baseline_cameras = cal.fit_cameras(cal.v1) info.update(status='five-photo fitted candidate; hardware validation pending', method='MuJoCo contact constraints plus manual 2-D landmark reprojection, jointly optimized with cameras', limitations='Single-view photographs with manually estimated landmarks and unknown lens/camera pose. ' 'Small image residual does not establish unique 3-D angles or real-world accuracy. ' 'Full stroke, unseen poses, and PD dynamics remain unmeasured.', annotations_sha256=base.sha256(ANNOTATIONS), v1_sha256=base.sha256(V1_JSON), calibrated_urdf_sha256=base.sha256(PHOTO_URDF), zero_command=cal.zero_command.tolist(), camera_parameters=vector[BASE_COUNT:].tolist(), baseline_camera_parameters=baseline_cameras.tolist(), previous_v1=cal.photo_metrics(cal.v1, baseline_cameras), photo_fit=cal.photo_metrics(q, vector[BASE_COUNT:]), zero_model_angles_deg=dict(zip(base.NAMES, np.rad2deg(cal.positions(q, cal.zero_command)).tolist())), travel_bounds_hit=[base.NAMES[i] for i in range(20) if abs(abs(q[20+i])-.5) < 1e-4]) PHOTO_JSON.write_text(json.dumps(info, indent=2, ensure_ascii=False)+'\n') return info def load(cal): info = json.loads(PHOTO_JSON.read_text()) for key, path in [('stock_urdf_sha256', base.STOCK_URDF), ('stock_xml_sha256', base.STOCK_XML), ('samples_sha256', base.SAMPLES), ('annotations_sha256', ANNOTATIONS), ('v1_sha256', V1_JSON)]: if info[key] != base.sha256(path): raise ValueError(f'Calibration input changed: {path}') if 'calibrated_urdf_sha256' in info and info['calibrated_urdf_sha256'] != base.sha256(PHOTO_URDF): raise ValueError('Calibrated URDF was edited after fitting') if info['zero_command'] != cal.zero_command.tolist(): raise ValueError('Zero command changed') return info, np.r_[info['parameter_vector'], info['camera_parameters']] def validate(cal, vector): q = vector[:BASE_COUNT] result = base.validate_live(cal, q) cal.set_pose(q, cal.zero_command) zero_penetration = max([0.] + [-c.dist for c in cal.data.contact])*1000 if zero_penetration > .2: raise AssertionError(f'Zero pose penetration {zero_penetration} mm') result['zero_penetration_mm'] = float(zero_penetration) result['zero_command'] = cal.zero_command.tolist() return result def render(cal, vector): from PIL import Image, ImageDraw, ImageFont REPORT.mkdir(parents=True, exist_ok=True) model, data = cal.model, cal.data model.vis.global_.offwidth, model.vis.global_.offheight = cal.width, cal.height # Neutral materials for both rows keep the pose comparison fair. for g in range(model.ngeom): if model.geom_group[g] == 2: name = model.body(model.geom_bodyid[g]).name model.geom_rgba[g] = [.48, .50, .52, 1] if name.endswith('_distal') else [.68, .70, .72, 1] renderer = base.mujoco.Renderer(model, cal.height, cal.width) cameras, focal = vector[BASE_COUNT:BASE_COUNT+30].reshape(5, 6), np.exp(vector[-1]) font = ImageFont.truetype('/usr/share/fonts/truetype/dejavu/DejaVuSans.ttf', 19) row_height = cal.height+50 sheet = Image.new('RGB', (cal.width*5, row_height*2), '#f1f5f9') header = ImageDraw.Draw(sheet) for row, parameters in enumerate([cal.v1, vector[:BASE_COUNT]]): for i in range(5): cal.set_pose(parameters, cal.photo_commands[i]) renderer.update_scene(data) rotation = Rotation.from_rotvec(cameras[i, :3]).as_matrix() eye = -rotation.T@cameras[i, 3:] forward, up = rotation.T@np.array([0, 0, 1]), rotation.T@np.array([0, -1, 0]) for camera in renderer.scene.camera: camera.pos[:], camera.forward[:], camera.up[:] = eye, forward, up camera.frustum_near, camera.frustum_far = .01, 5. camera.frustum_top = .01*cal.height/2/focal camera.frustum_bottom = -camera.frustum_top camera.frustum_center = 0 camera.frustum_width = .01*cal.width/2/focal # MuJoCo GL half-width for light in renderer.scene.lights[:renderer.scene.nlight]: light.pos[:], light.dir[:] = eye, forward light.ambient[:] = [.25, .25, .25] light.diffuse[:] = [.65, .65, .65] image = Image.fromarray(renderer.render()) sheet.paste(image, (i*cal.width, row*row_height+50)) header.text((i*cal.width+14, row*row_height+16), ('Previous contact fit' if row == 0 else 'Photo + zero fit')+' / '+cal.photos[i]['name'], fill='#172033', font=font) if row == 1: image.save(REPORT/f'{cal.photos[i]["name"]}_pose.png') overlay = image.copy() draw = ImageDraw.Draw(overlay) predicted = cal.project(cal.world_points(i, parameters), cameras[i], focal) for observed, point in zip(cal.photo_data[i][2], predicted): draw.line([tuple(observed), tuple(point)], fill='#fbbf24', width=2) draw.ellipse([observed[0]-4, observed[1]-4, observed[0]+4, observed[1]+4], outline='#22d3ee', width=2) draw.ellipse([point[0]-2, point[1]-2, point[0]+2, point[1]+2], fill='#f87171') draw.text((10, 8), 'Cyan: manual photo points / red: model', fill='white', font=font) overlay.save(REPORT/f'{cal.photos[i]["name"]}_landmarks.png') renderer.close() sheet.save(REPORT/'photo_fit_comparison.png') print(REPORT/'photo_fit_comparison.png') def main(): parser = argparse.ArgumentParser(description=__doc__) parser.add_argument('--fit', action='store_true') parser.add_argument('--check', action='store_true') parser.add_argument('--render', action='store_true') parser.add_argument('--starts', type=int, default=3) parser.add_argument('--max-nfev', type=int, default=250) parser.add_argument('--preview', choices=['index', 'middle', 'ring', 'pinky', 'zero']) args = parser.parse_args() cal = PhotoCalibration() if args.preview: preview(cal, args.preview) return if not (args.fit or args.check or args.render): parser.error('Choose --fit, --check, --render or --preview') if args.starts < 1 or args.max_nfev < 1: parser.error('Optimization budgets must be positive') if args.fit: if PHOTO_JSON.exists(): _, initial = load(cal) else: initial = np.r_[cal.v1, cal.camera_initial(cal.v1)] best, history = cal.fit_photos(initial, args.starts, args.max_nfev) vector = best.x info = save(cal, vector, history) print('Exported photo URDF. Regenerate with O30_RIGHT_PREPARE_ONLY=1 ./hands/O30/scripts/run_o30_right_mujoco_plan.sh') else: info, vector = load(cal) if args.check: info['live_validation'] = validate(cal, vector) REPORT.mkdir(parents=True, exist_ok=True) (REPORT/'validation.json').write_text(json.dumps(info, indent=2, ensure_ascii=False)+'\n') print(json.dumps(info['live_validation'], indent=2)) if args.render: render(cal, vector) def preview(cal, name): import time import mujoco.viewer from linker_hand_mujoco_ros2.utils import o30_right_joints as mapping mapping.configure_o30_right_limits(base.LIVE_XML) model = base.mujoco.MjModel.from_xml_path(str(base.LIVE_XML)) data = base.mujoco.MjData(model) command = cal.zero_command if name == 'zero' else next(s['command'] for s in cal.samples if s['finger'] == name) for joint, value in mapping.sdk_range_to_full_o30_right_urdf_positions(list(command)).items(): data.qpos[model.jnt_qposadr[model.joint(joint).id]] = value base.mujoco.mj_forward(model, data) with mujoco.viewer.launch_passive(model, data) as viewer: viewer.cam.lookat[:] = [.045, 0, .10] viewer.cam.distance, viewer.cam.azimuth, viewer.cam.elevation = .3, 175, -15 while viewer.is_running(): viewer.sync() time.sleep(.02) if __name__ == '__main__': main()